Software
R Packages Link to heading
hexmakeR Link to heading
Interactive hex sticker generator for R packages with Shiny interface and programmatic API.
phenoscapR Link to heading
Spatial single-cell analysis for Akoya PhenoCycler/CODEX multiplexed tissue imaging data.
bambamR Link to heading
RNA-seq analysis toolkit from BAM to publication — QC, normalization, differential expression, and visualization.
lstparsR Link to heading
Tidy parsing of NONMEM listing files for population PK/PD workflows.
reflowR Link to heading
Themed workflowr extensions for reproducible research with custom colour schemes, ggplot2 themes, and report templates.
songR Link to heading
Native R/C++ implementation of the SONG dimensionality reduction algorithm with incremental embedding support.
molpathR Link to heading
Integrated database for molecular pathology — VCF, XML, PDF, clinical data, imaging, and survival analysis with Shiny explorer.
segmantR Link to heading
Human-in-the-loop cell segmentation for histological and fluorescence microscopy images.
scimagR Link to heading
MRI/CT analysis and visualization for spinal cord injury — lesion quantification, temporal tracking, and clinical reporting.
hyperspectR Link to heading
Hyperspectral imaging analysis for Cubert cameras in biomedical and surgical applications — tissue indices, Shiny viewer.